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pythonannotation-tooldatasetsactive-learningtext-annotationdatasetnatural-language-processingdata-labelingmachine-learning
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635 lines
24 KiB
635 lines
24 KiB
import collections
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import json
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import random
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from auto_labeling_pipeline.menu import Options
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from auto_labeling_pipeline.models import RequestModelFactory
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from auto_labeling_pipeline.mappings import MappingTemplate
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from auto_labeling_pipeline.task import TaskFactory
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from auto_labeling_pipeline.postprocessing import PostProcessor
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from auto_labeling_pipeline.pipeline import pipeline
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from django.conf import settings
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from django.contrib.auth.models import User
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from django.db import transaction
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from django.db.utils import IntegrityError
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from django.shortcuts import get_object_or_404, redirect
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from django_filters.rest_framework import DjangoFilterBackend
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from django.db.models import Count, F, Q
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from libcloud.base import DriverType, get_driver
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from libcloud.storage.types import ContainerDoesNotExistError, ObjectDoesNotExistError
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from rest_framework import generics, filters, status
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from rest_framework.exceptions import ParseError, ValidationError
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from rest_framework.permissions import IsAuthenticated, IsAuthenticatedOrReadOnly
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from rest_framework.response import Response
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from rest_framework.views import APIView
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from rest_framework.parsers import MultiPartParser
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from rest_framework_csv.renderers import CSVRenderer
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from .filters import DocumentFilter
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from .models import Project, Label, Document, RoleMapping, Role, Comment, AutoLabelingConfig
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from .permissions import IsProjectAdmin, IsAnnotatorAndReadOnly, IsAnnotator, IsAnnotationApproverAndReadOnly, IsOwnAnnotation, IsAnnotationApprover, IsOwnComment
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from .serializers import ProjectSerializer, LabelSerializer, DocumentSerializer, UserSerializer, ApproverSerializer, CommentSerializer
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from .serializers import ProjectPolymorphicSerializer, RoleMappingSerializer, RoleSerializer, AutoLabelingConfigSerializer
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from .utils import CSVParser, ExcelParser, JSONParser, PlainTextParser, FastTextParser, CoNLLParser, AudioParser, iterable_to_io
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from .utils import JSONLRenderer, PlainTextRenderer
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from .utils import JSONPainter, CSVPainter, FastTextPainter
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IsInProjectReadOnlyOrAdmin = (IsAnnotatorAndReadOnly | IsAnnotationApproverAndReadOnly | IsProjectAdmin)
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IsInProjectOrAdmin = (IsAnnotator | IsAnnotationApprover | IsProjectAdmin)
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class Health(APIView):
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permission_classes = (IsAuthenticatedOrReadOnly,)
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def get(self, request, *args, **kwargs):
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return Response({'status': 'green'})
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class Me(APIView):
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permission_classes = (IsAuthenticated,)
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def get(self, request, *args, **kwargs):
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serializer = UserSerializer(request.user, context={'request': request})
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return Response(serializer.data)
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class Features(APIView):
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permission_classes = (IsAuthenticated,)
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def get(self, request, *args, **kwargs):
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return Response({
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'cloud_upload': bool(settings.CLOUD_BROWSER_APACHE_LIBCLOUD_PROVIDER),
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})
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class ProjectList(generics.ListCreateAPIView):
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serializer_class = ProjectPolymorphicSerializer
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pagination_class = None
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permission_classes = [IsAuthenticated & IsInProjectReadOnlyOrAdmin]
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def get_queryset(self):
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return self.request.user.projects
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def perform_create(self, serializer):
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serializer.save(users=[self.request.user])
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class ProjectDetail(generics.RetrieveUpdateDestroyAPIView):
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queryset = Project.objects.all()
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serializer_class = ProjectSerializer
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lookup_url_kwarg = 'project_id'
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permission_classes = [IsAuthenticated & IsInProjectReadOnlyOrAdmin]
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class StatisticsAPI(APIView):
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pagination_class = None
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permission_classes = [IsAuthenticated & IsInProjectReadOnlyOrAdmin]
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def get(self, request, *args, **kwargs):
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p = get_object_or_404(Project, pk=self.kwargs['project_id'])
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include = set(request.GET.getlist('include'))
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response = {}
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if not include or 'label' in include:
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label_count, user_count = self.label_per_data(p)
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response['label'] = label_count
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# TODO: Make user_label count chart
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response['user_label'] = user_count
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if not include or 'total' in include or 'remaining' in include or 'user' in include:
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progress = self.progress(project=p)
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response.update(progress)
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if include:
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response = {key: value for (key, value) in response.items() if key in include}
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return Response(response)
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@staticmethod
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def _get_user_completion_data(annotation_class, annotation_filter):
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all_annotation_objects = annotation_class.objects.filter(annotation_filter)
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set_user_data = collections.defaultdict(set)
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for ind_obj in all_annotation_objects.values('user__username', 'document__id'):
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set_user_data[ind_obj['user__username']].add(ind_obj['document__id'])
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return {i: len(set_user_data[i]) for i in set_user_data}
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def progress(self, project):
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docs = project.documents
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annotation_class = project.get_annotation_class()
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total = docs.count()
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annotation_filter = Q(document_id__in=docs.all())
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user_data = self._get_user_completion_data(annotation_class, annotation_filter)
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if not project.collaborative_annotation:
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annotation_filter &= Q(user_id=self.request.user)
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done = annotation_class.objects.filter(annotation_filter)\
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.aggregate(Count('document', distinct=True))['document__count']
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remaining = total - done
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return {'total': total, 'remaining': remaining, 'user': user_data}
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def label_per_data(self, project):
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annotation_class = project.get_annotation_class()
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return annotation_class.objects.get_label_per_data(project=project)
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class ApproveLabelsAPI(APIView):
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permission_classes = [IsAuthenticated & (IsAnnotationApprover | IsProjectAdmin)]
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def post(self, request, *args, **kwargs):
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approved = self.request.data.get('approved', True)
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document = get_object_or_404(Document, pk=self.kwargs['doc_id'])
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document.annotations_approved_by = self.request.user if approved else None
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document.save()
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return Response(ApproverSerializer(document).data)
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class LabelList(generics.ListCreateAPIView):
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serializer_class = LabelSerializer
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pagination_class = None
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permission_classes = [IsAuthenticated & IsInProjectReadOnlyOrAdmin]
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def get_queryset(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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return project.labels
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def perform_create(self, serializer):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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serializer.save(project=project)
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class LabelDetail(generics.RetrieveUpdateDestroyAPIView):
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queryset = Label.objects.all()
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serializer_class = LabelSerializer
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lookup_url_kwarg = 'label_id'
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permission_classes = [IsAuthenticated & IsInProjectReadOnlyOrAdmin]
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class DocumentList(generics.ListCreateAPIView):
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serializer_class = DocumentSerializer
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filter_backends = (DjangoFilterBackend, filters.SearchFilter, filters.OrderingFilter)
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search_fields = ('text', )
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ordering_fields = ('created_at', 'updated_at', 'doc_annotations__updated_at',
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'seq_annotations__updated_at', 'seq2seq_annotations__updated_at')
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filter_class = DocumentFilter
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permission_classes = [IsAuthenticated & IsInProjectReadOnlyOrAdmin]
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def get_queryset(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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queryset = project.documents
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if project.randomize_document_order:
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random.seed(self.request.user.id)
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value = random.randrange(2, 20)
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queryset = queryset.annotate(sort_id=F('id') % value).order_by('sort_id', 'id')
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else:
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queryset = queryset.order_by('id')
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return queryset
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def perform_create(self, serializer):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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serializer.save(project=project)
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def delete(self, request, *args, **kwargs):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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queryset = project.documents
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queryset.all().delete()
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return Response(status=status.HTTP_204_NO_CONTENT)
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class DocumentDetail(generics.RetrieveUpdateDestroyAPIView):
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queryset = Document.objects.all()
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serializer_class = DocumentSerializer
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lookup_url_kwarg = 'doc_id'
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permission_classes = [IsAuthenticated & IsInProjectReadOnlyOrAdmin]
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class AnnotationList(generics.ListCreateAPIView):
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pagination_class = None
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permission_classes = [IsAuthenticated & IsInProjectOrAdmin]
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swagger_schema = None
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def get_serializer_class(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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self.serializer_class = project.get_annotation_serializer()
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return self.serializer_class
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def get_queryset(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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model = project.get_annotation_class()
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queryset = model.objects.filter(document=self.kwargs['doc_id'])
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if not project.collaborative_annotation:
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queryset = queryset.filter(user=self.request.user)
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return queryset
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def create(self, request, *args, **kwargs):
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self.check_single_class_classification(self.kwargs['project_id'], self.kwargs['doc_id'], request.user)
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request.data['document'] = self.kwargs['doc_id']
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return super().create(request, args, kwargs)
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def perform_create(self, serializer):
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serializer.save(document_id=self.kwargs['doc_id'], user=self.request.user)
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def delete(self, request, *args, **kwargs):
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queryset = self.get_queryset()
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queryset.all().delete()
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return Response(status=status.HTTP_204_NO_CONTENT)
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@staticmethod
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def check_single_class_classification(project_id, doc_id, user):
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project = get_object_or_404(Project, pk=project_id)
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if not project.single_class_classification:
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return
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model = project.get_annotation_class()
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annotations = model.objects.filter(document_id=doc_id)
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if not project.collaborative_annotation:
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annotations = annotations.filter(user=user)
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if annotations.exists():
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raise ValidationError('requested to create duplicate annotation for single-class-classification project')
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class AnnotationDetail(generics.RetrieveUpdateDestroyAPIView):
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lookup_url_kwarg = 'annotation_id'
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swagger_schema = None
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def get_permissions(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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if project.collaborative_annotation:
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self.permission_classes = [IsAuthenticated & IsInProjectOrAdmin]
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else:
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self.permission_classes = [IsAuthenticated & IsInProjectOrAdmin & IsOwnAnnotation]
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return super().get_permissions()
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def get_serializer_class(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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self.serializer_class = project.get_annotation_serializer()
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return self.serializer_class
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def get_queryset(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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model = project.get_annotation_class()
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self.queryset = model.objects.all()
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return self.queryset
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class CommentList(generics.ListCreateAPIView):
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serializer_class = CommentSerializer
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permission_classes = [IsAuthenticated & IsInProjectOrAdmin]
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def get_queryset(self):
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return Comment.objects.filter(
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document_id=self.kwargs['doc_id'],
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user_id=self.request.user.id,
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).all()
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def perform_create(self, serializer):
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serializer.save(user=self.request.user, document_id=self.kwargs['doc_id'])
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class CommentDetail(generics.RetrieveUpdateDestroyAPIView):
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queryset = Comment.objects.all()
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serializer_class = CommentSerializer
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lookup_url_kwarg = 'comment_id'
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permission_classes = [IsAuthenticated & IsInProjectOrAdmin & IsOwnComment]
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class TextUploadAPI(APIView):
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parser_classes = (MultiPartParser,)
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permission_classes = [IsAuthenticated & IsProjectAdmin]
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def post(self, request, *args, **kwargs):
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if 'file' not in request.data:
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raise ParseError('Empty content')
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self.save_file(
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user=request.user,
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file=request.data['file'],
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file_format=request.data['format'],
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project_id=kwargs['project_id'],
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)
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return Response(status=status.HTTP_201_CREATED)
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@classmethod
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def save_file(cls, user, file, file_format, project_id):
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project = get_object_or_404(Project, pk=project_id)
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parser = cls.select_parser(file_format)
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data = parser.parse(file)
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storage = project.get_storage(data)
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storage.save(user)
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@classmethod
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def select_parser(cls, file_format):
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if file_format == 'plain':
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return PlainTextParser()
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elif file_format == 'csv':
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return CSVParser()
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elif file_format == 'json':
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return JSONParser()
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elif file_format == 'conll':
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return CoNLLParser()
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elif file_format == 'excel':
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return ExcelParser()
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elif file_format == 'audio':
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return AudioParser()
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elif file_format == 'fastText':
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return FastTextParser()
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else:
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raise ValidationError('format {} is invalid.'.format(file_format))
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class CloudUploadAPI(APIView):
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permission_classes = TextUploadAPI.permission_classes
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def get(self, request, *args, **kwargs):
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try:
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project_id = request.query_params['project_id']
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file_format = request.query_params['upload_format']
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cloud_container = request.query_params['container']
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cloud_object = request.query_params['object']
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except KeyError as ex:
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raise ValidationError('query parameter {} is missing'.format(ex))
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try:
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cloud_file = self.get_cloud_object_as_io(cloud_container, cloud_object)
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except ContainerDoesNotExistError:
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raise ValidationError('cloud container {} does not exist'.format(cloud_container))
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except ObjectDoesNotExistError:
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raise ValidationError('cloud object {} does not exist'.format(cloud_object))
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TextUploadAPI.save_file(
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user=request.user,
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file=cloud_file,
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file_format=file_format,
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project_id=project_id,
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)
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next_url = request.query_params.get('next')
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if next_url == 'about:blank':
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return Response(data='', content_type='text/plain', status=status.HTTP_201_CREATED)
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if next_url:
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return redirect(next_url)
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return Response(status=status.HTTP_201_CREATED)
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@classmethod
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def get_cloud_object_as_io(cls, container_name, object_name):
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provider = settings.CLOUD_BROWSER_APACHE_LIBCLOUD_PROVIDER.lower()
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account = settings.CLOUD_BROWSER_APACHE_LIBCLOUD_ACCOUNT
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key = settings.CLOUD_BROWSER_APACHE_LIBCLOUD_SECRET_KEY
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driver = get_driver(DriverType.STORAGE, provider)
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client = driver(account, key)
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cloud_container = client.get_container(container_name)
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cloud_object = cloud_container.get_object(object_name)
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return iterable_to_io(cloud_object.as_stream())
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class TextDownloadAPI(APIView):
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permission_classes = TextUploadAPI.permission_classes
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renderer_classes = (CSVRenderer, JSONLRenderer, PlainTextRenderer)
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def get(self, request, *args, **kwargs):
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format = request.query_params.get('q')
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only_approved = request.query_params.get('onlyApproved')
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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documents = (
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project.documents.exclude(annotations_approved_by = None)
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if only_approved == 'true'
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else project.documents.all()
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)
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painter = self.select_painter(format)
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# jsonl-textlabel format prints text labels while jsonl format prints annotations with label ids
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# jsonl-textlabel format - "labels": [[0, 15, "PERSON"], ..]
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# jsonl format - "annotations": [{"label": 5, "start_offset": 0, "end_offset": 2, "user": 1},..]
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if format in ('jsonl', 'txt'):
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labels = project.labels.all()
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data = painter.paint_labels(documents, labels)
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else:
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data = painter.paint(documents)
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return Response(data)
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def select_painter(self, format):
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if format == 'csv':
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return CSVPainter()
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elif format == 'jsonl' or format == 'json':
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return JSONPainter()
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elif format == 'txt':
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return FastTextPainter()
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else:
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raise ValidationError('format {} is invalid.'.format(format))
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class Users(APIView):
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permission_classes = [IsAuthenticated & IsProjectAdmin]
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def get(self, request, *args, **kwargs):
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queryset = User.objects.all()
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serialized_data = UserSerializer(queryset, many=True).data
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return Response(serialized_data)
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class Roles(generics.ListCreateAPIView):
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serializer_class = RoleSerializer
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pagination_class = None
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permission_classes = [IsAuthenticated & IsProjectAdmin]
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queryset = Role.objects.all()
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class RoleMappingList(generics.ListCreateAPIView):
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serializer_class = RoleMappingSerializer
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pagination_class = None
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permission_classes = [IsAuthenticated & IsProjectAdmin]
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def get_queryset(self):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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return project.role_mappings
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def perform_create(self, serializer):
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project = get_object_or_404(Project, pk=self.kwargs['project_id'])
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serializer.save(project=project)
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class RoleMappingDetail(generics.RetrieveUpdateDestroyAPIView):
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queryset = RoleMapping.objects.all()
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serializer_class = RoleMappingSerializer
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lookup_url_kwarg = 'rolemapping_id'
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permission_classes = [IsAuthenticated & IsProjectAdmin]
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class LabelUploadAPI(APIView):
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parser_classes = (MultiPartParser,)
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permission_classes = [IsAuthenticated & IsProjectAdmin]
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@transaction.atomic
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def post(self, request, *args, **kwargs):
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if 'file' not in request.data:
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raise ParseError('Empty content')
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labels = json.load(request.data['file'])
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project = get_object_or_404(Project, pk=kwargs['project_id'])
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try:
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for label in labels:
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serializer = LabelSerializer(data=label)
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serializer.is_valid(raise_exception=True)
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serializer.save(project=project)
|
|
return Response(status=status.HTTP_201_CREATED)
|
|
except IntegrityError:
|
|
content = {'error': 'IntegrityError: you cannot create a label with same name or shortkey.'}
|
|
return Response(content, status=status.HTTP_400_BAD_REQUEST)
|
|
|
|
|
|
class AutoLabelingTemplateListAPI(APIView):
|
|
permission_classes = [IsAuthenticated & IsProjectAdmin]
|
|
|
|
def get(self, request, *args, **kwargs):
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
options = Options.filter_by_task(task_name=project.project_type)
|
|
option_names = [o.name for o in options]
|
|
return Response(option_names, status=status.HTTP_200_OK)
|
|
|
|
|
|
class AutoLabelingTemplateDetailAPI(APIView):
|
|
permission_classes = [IsAuthenticated & IsProjectAdmin]
|
|
|
|
def get(self, request, *args, **kwargs):
|
|
option_name = self.kwargs['option_name']
|
|
option = Options.find(option_name=option_name)
|
|
return Response(option.to_dict(), status=status.HTTP_200_OK)
|
|
|
|
|
|
class AutoLabelingConfigList(generics.ListCreateAPIView):
|
|
serializer_class = AutoLabelingConfigSerializer
|
|
pagination_class = None
|
|
permission_classes = [IsAuthenticated & IsProjectAdmin]
|
|
|
|
def get_queryset(self):
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
return project.auto_labeling_config
|
|
|
|
def perform_create(self, serializer):
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
serializer.save(project=project)
|
|
|
|
|
|
class AutoLabelingConfigDetail(generics.RetrieveUpdateDestroyAPIView):
|
|
queryset = AutoLabelingConfig.objects.all()
|
|
serializer_class = AutoLabelingConfigSerializer
|
|
lookup_url_kwarg = 'config_id'
|
|
permission_classes = [IsAuthenticated & IsProjectAdmin]
|
|
|
|
|
|
class AutoLabelingConfigTest(APIView):
|
|
permission_classes = [IsAuthenticated & IsProjectAdmin]
|
|
|
|
def post(self, *args, **kwargs):
|
|
try:
|
|
output = self.pass_config_validation()
|
|
output = self.pass_pipeline_call(output)
|
|
return Response(
|
|
data={'valid': True, 'labels': output.dict()},
|
|
status=status.HTTP_200_OK
|
|
)
|
|
except Exception:
|
|
return Response(
|
|
data={'valid': False},
|
|
status=status.HTTP_400_BAD_REQUEST
|
|
)
|
|
|
|
def pass_config_validation(self):
|
|
config = self.request.data['config']
|
|
serializer = AutoLabelingConfigSerializer(data=config)
|
|
serializer.is_valid(raise_exception=True)
|
|
return serializer
|
|
|
|
def pass_pipeline_call(self, serializer):
|
|
test_input = self.request.data['input']
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
model = RequestModelFactory.create(
|
|
model_name=serializer.data.get('model_name'),
|
|
attributes=serializer.data.get('model_attrs')
|
|
)
|
|
template = MappingTemplate(
|
|
task=TaskFactory.create(project.project_type),
|
|
template=serializer.data.get('template')
|
|
)
|
|
post_processor = PostProcessor(serializer.data.get('label_mapping'))
|
|
labels = pipeline(
|
|
text=test_input,
|
|
request_model=model,
|
|
mapping_template=template,
|
|
post_processing=post_processor
|
|
)
|
|
return labels
|
|
|
|
|
|
class AutoLabelingAnnotation(generics.CreateAPIView):
|
|
pagination_class = None
|
|
permission_classes = [IsAuthenticated & IsInProjectOrAdmin]
|
|
swagger_schema = None
|
|
|
|
def get_serializer_class(self):
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
self.serializer_class = project.get_annotation_serializer()
|
|
return self.serializer_class
|
|
|
|
def get_queryset(self):
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
model = project.get_annotation_class()
|
|
|
|
queryset = model.objects.filter(document=self.kwargs['doc_id'])
|
|
if not project.collaborative_annotation:
|
|
queryset = queryset.filter(user=self.request.user)
|
|
|
|
return queryset
|
|
|
|
def create(self, request, *args, **kwargs):
|
|
labels = self.extract()
|
|
labels = self.transform(labels)
|
|
serializer = self.get_serializer(data=labels, many=True)
|
|
serializer.is_valid(raise_exception=True)
|
|
self.perform_create(serializer)
|
|
headers = self.get_success_headers(serializer.data)
|
|
return Response(serializer.data, status=status.HTTP_201_CREATED, headers=headers)
|
|
|
|
def perform_create(self, serializer):
|
|
serializer.save(user=self.request.user)
|
|
|
|
def extract(self):
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
doc = get_object_or_404(Document, pk=self.kwargs['doc_id'])
|
|
config = project.auto_labeling_config.get(default=True)
|
|
model = RequestModelFactory.create(
|
|
model_name=config.model_name,
|
|
attributes=config.model_attrs
|
|
)
|
|
template = MappingTemplate(
|
|
task=TaskFactory.create(project.project_type),
|
|
template=config.template
|
|
)
|
|
post_processor = PostProcessor(config.label_mapping)
|
|
labels = pipeline(
|
|
text=doc.text,
|
|
request_model=model,
|
|
mapping_template=template,
|
|
post_processing=post_processor
|
|
)
|
|
return labels.dict()
|
|
|
|
def transform(self, labels):
|
|
project = get_object_or_404(Project, pk=self.kwargs['project_id'])
|
|
for label in labels:
|
|
label['document'] = self.kwargs['doc_id']
|
|
if 'label' in label:
|
|
label['label'] = project.labels.get(text=label.pop('label')).id
|
|
return labels
|