import csv import io import json import os from typing import Dict, Iterator, List, Optional, Type import chardet import pyexcel import pyexcel.exceptions from chardet.universaldetector import UniversalDetector from pydantic import ValidationError from seqeval.scheme import BILOU, IOB2, IOBES, IOE2, Tokens from .cleaners import Cleaner from .data import BaseData from .exception import FileParseException, FileParseExceptions from .label import Label from .labels import Labels class Record: def __init__(self, data: Type[BaseData], label: List[Label] = None, line_num: int = -1): if label is None: label = [] self._data = data self._label = label self._line_num = line_num def __str__(self): return f'{self._data}\t{self._label}' def clean(self, cleaner: Cleaner): label = cleaner.clean(self._label) changed = len(label) != len(self.label) self._label = label if changed: raise FileParseException( filename=self._data.filename, line_num=self._line_num, message=cleaner.message ) @property def data(self): return self._data.dict() def annotation(self, mapping: Dict[str, int]): labels = Labels(self._label) labels = labels.replace_label(mapping) return labels.dict() @property def label(self): return [ { 'text': label.name } for label in self._label if label.has_name() and label.name ] class Dataset: def __init__(self, filenames: List[str], data_class: Type[BaseData], label_class: Type[Label], encoding: Optional[str] = None, **kwargs): self.filenames = filenames self.data_class = data_class self.label_class = label_class self.encoding = encoding self.kwargs = kwargs def __iter__(self) -> Iterator[Record]: errors = [] for filename in self.filenames: try: yield from self.load(filename) except (UnicodeDecodeError, FileParseException) as err: message = str(err) raise FileParseException(filename, line_num=-1, message=message) except FileParseExceptions as err: errors.extend(err.exceptions) if errors: raise FileParseExceptions(errors) def load(self, filename: str) -> Iterator[Record]: """Loads a file content.""" encoding = self.detect_encoding(filename) with open(filename, encoding=encoding) as f: data = self.data_class.parse(filename=filename, text=f.read()) record = Record(data=data) yield record def detect_encoding(self, filename: str, buffer_size=io.DEFAULT_BUFFER_SIZE): if self.encoding != 'Auto': return self.encoding # For a small file. if os.path.getsize(filename) < buffer_size: detected = chardet.detect(open(filename, 'rb').read()) return detected.get('encoding', 'utf-8') # For a large file. with open(filename, 'rb') as f: detector = UniversalDetector() while True: binary = f.read(buffer_size) detector.feed(binary) if binary == b'': break if detector.done: break if detector.done: return detector.result['encoding'] else: return 'utf-8' def from_row(self, filename: str, row: Dict, line_num: int) -> Record: column_data = self.kwargs.get('column_data', 'text') if column_data not in row: message = f'{column_data} does not exist.' raise FileParseException(filename, line_num, message) text = row.pop(column_data) label = row.pop(self.kwargs.get('column_label', 'label'), []) label = [label] if isinstance(label, str) else label try: label = [self.label_class.parse(o) for o in label] except (ValidationError, TypeError): label = [] try: data = self.data_class.parse(text=text, filename=filename, meta=row) except ValidationError: message = 'The empty text is not allowed.' raise FileParseException(filename, line_num, message) record = Record(data=data, label=label, line_num=line_num) return record class FileBaseDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: data = self.data_class.parse(filename=filename) record = Record(data=data) yield record class TextFileDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: encoding = self.detect_encoding(filename) with open(filename, encoding=encoding) as f: data = self.data_class.parse(filename=filename, text=f.read()) record = Record(data=data) yield record class TextLineDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: encoding = self.detect_encoding(filename) errors = [] with open(filename, encoding=encoding) as f: for line_num, line in enumerate(f, start=1): try: data = self.data_class.parse(filename=filename, text=line.rstrip()) record = Record(data=data, line_num=line_num) yield record except ValidationError: message = 'The empty text is not allowed.' errors.append(FileParseException(filename, line_num, message)) if errors: raise FileParseExceptions(errors) class CsvDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: encoding = self.detect_encoding(filename) errors = [] with open(filename, encoding=encoding) as f: delimiter = self.kwargs.get('delimiter', ',') reader = csv.reader(f, delimiter=delimiter) header = next(reader) column_data = self.kwargs.get('column_data', 'text') if column_data not in header: message = f'Column `{column_data}` does not exist in the header: {header}' raise FileParseException(filename, 1, message) for line_num, row in enumerate(reader, start=2): row = dict(zip(header, row)) try: yield self.from_row(filename, row, line_num) except FileParseException as err: errors.append(err) if errors: raise FileParseExceptions(errors) class JSONDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: encoding = self.detect_encoding(filename) with open(filename, encoding=encoding) as f: try: dataset = json.load(f) for line_num, row in enumerate(dataset, start=1): yield self.from_row(filename, row, line_num) except json.decoder.JSONDecodeError: message = 'Failed to decode the json file.' raise FileParseException(filename, line_num=-1, message=message) class JSONLDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: encoding = self.detect_encoding(filename) errors = [] with open(filename, encoding=encoding) as f: for line_num, line in enumerate(f, start=1): try: row = json.loads(line) yield self.from_row(filename, row, line_num) except json.decoder.JSONDecodeError: message = 'Failed to decode the line.' errors.append(FileParseException(filename, line_num, message)) if errors: raise FileParseExceptions(errors) class ExcelDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: records = pyexcel.iget_records(file_name=filename) errors = [] try: for line_num, row in enumerate(records, start=1): try: yield self.from_row(filename, row, line_num) except FileParseException as err: errors.append(err) except pyexcel.exceptions.FileTypeNotSupported: message = 'This file type is not supported.' raise FileParseException(filename, line_num=-1, message=message) if errors: raise FileParseExceptions(errors) class FastTextDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: encoding = self.detect_encoding(filename) errors = [] with open(filename, encoding=encoding) as f: for line_num, line in enumerate(f, start=1): labels = [] tokens = [] for token in line.rstrip().split(' '): if token.startswith('__label__'): if token == '__label__': message = 'Label name is empty.' errors.append(FileParseException(filename, line_num, message)) break label_name = token[len('__label__'):] labels.append(self.label_class.parse(label_name)) else: tokens.append(token) text = ' '.join(tokens) try: data = self.data_class.parse(filename=filename, text=text) record = Record(data=data, label=labels, line_num=line_num) yield record except ValidationError: message = 'The empty text is not allowed.' errors.append(FileParseException(filename, line_num, message)) if errors: raise FileParseExceptions(errors) class CoNLLDataset(Dataset): def load(self, filename: str) -> Iterator[Record]: encoding = self.detect_encoding(filename) with open(filename, encoding=encoding) as f: words, tags = [], [] for line_num, line in enumerate(f, start=1): line = line.rstrip() if line: tokens = line.split('\t') if len(tokens) != 2: message = 'A line must be separated by tab and has two columns.' raise FileParseException(filename, line_num, message) word, tag = tokens words.append(word) tags.append(tag) else: yield self.create_record(filename, tags, words) words, tags = [], [] if words: yield self.create_record(filename, tags, words) def create_record(self, filename, tags, words): delimiter = self.kwargs.get('delimiter', ' ') text = delimiter.join(words) data = self.data_class.parse(filename=filename, text=text) labels = self.get_label(words, tags, delimiter) record = Record(data=data, label=labels) return record def get_scheme(self, scheme: str): mapping = { 'IOB2': IOB2, 'IOE2': IOE2, 'IOBES': IOBES, 'BILOU': BILOU } return mapping[scheme] def get_label(self, words: List[str], tags: List[str], delimiter: str) -> List[Label]: scheme = self.get_scheme(self.kwargs.get('scheme', 'IOB2')) tokens = Tokens(tags, scheme) labels = [] for entity in tokens.entities: text = delimiter.join(words[:entity.start]) start = len(text) + len(delimiter) if text else len(text) chunk = words[entity.start: entity.end] text = delimiter.join(chunk) end = start + len(text) labels.append(self.label_class.parse((start, end, entity.tag))) return labels